Fleming J, Marvel SW, Supak S, Motsinger-Reif AA, Reif DM. ToxPi*GIS Toolkit: creating, viewing, and sharing integrative visualizations for geospatial data using ArcGIS. J Expo Sci Environ Epidemiol. 2022 Apr 26. doi: 10.1038/s41370-022-00433-w. Epub ahead of print. PMID: 35474345.
Blog posts : "skylar marvel"
Skylar nominated for College-level award
Skylar Marvel was nominated as a finalist for the 2022 College of Sciences Award for Excellence! The awards ceremony will take place on March 18th.
Implementation of Zebrafish Ontologies for Toxicology Screening (2022) Frontiers in Toxicology
Anne E Thessen, Skylar Marvel, J. C. Achenbach, Stephan Fischer, Melissa Anne Haendel, Kimberly Hayward, Nils Klüver, Sarah Könemann, Jessica Legradi, Pamela J Lein, Connor Leong, Arantza Muriana, J. Erik Mylroie, Stephanie Padilla, Dante Perone, Antonio Planchart, Rafael Miñana Prieto, Celia Queved…
Systematic developmental toxicity assessment of a structurally diverse library of PFAS in zebrafish (2022) J Hazard Mater
Truong L, Rericha Y, Thunga P, Marvel S, Wallis D, Simonich MT, Field JA, Cao D, Reif DM, Tanguay RL. Systematic developmental toxicity assessment of a structurally diverse library of PFAS in zebrafish. J Hazard Mater. 2022 Mar 2;431:128615. doi: 10.1016/j.jhazmat.2022.128615. Epub ahead of print. P…
toxpiR package posted on CRAN
An R package for the ToxPi framework has been assembled and posted to CRAN:
https://cran.r-project.org/web/packages/toxpiR/index.html
Grant awarded to develop integrated synthesis of data generated across labs of the Nanotechnology Health Implications Research (NHIR) consortium
The Reif & Tanguay labs were awarded a $105,000 grant to develop an integrated model of data generated across labs of the Nanotechnology Health Implications Research (NHIR) consortium. This is a new award under the parent U01 "Multidimensional in vivo Assessments of Engineered Nanomaterials and Biol…
The multi-dimensional embryonic zebrafish platform predicts flame retardant bioactivity (2020) Reproductive Toxicology
The multi-dimensional embryonic zebrafish platform predicts flame retardant bioactivity. Truong L, Marvel S, Reif DM, Thomas D, Pande P, Dasgupta S, Simonich MT, Waters KM, Tanguay RL.Reprod Toxicol. 2020 Aug 19:S0890-6238(20)30196-9. doi: 10.1016/j.reprotox.2020.08.007. Online ahead of print.PMID:…
HGBEnviroScreen: Enabling Community Action through Data Integration in the Houston–Galveston– Brazoria Region (2020) International Journal of Environmental Research and Public Health
Sharmila Bhandari, P. Grace Tee Lewis, Elena Craft, Skylar W. Marvel, David M. Reif, and Weihsueh A. Chiu. HGBEnviroScreen: Enabling Community Action through Data Integration in the Houston–Galveston–Brazoria Region. Int. J. …
Integration of curated and high-throughput screening data to elucidate environmental influences on disease pathways (2019) Computational Toxicology
MB Kosnik, A Planchart, SW Marvel, DM Reif, CJ Mattingly (2019) Integration of curated and high-throughput screening data to elucidate environmental influences on disease pathways. Computational Toxicology, 100094
Joint retreat in Oregon with Tanguay + Reif labs
The Tanguay + Reif labs met in Oregon for their second joint retreat.
The retreat started with scientific sessions and lab tours at Oregon State University and the Sinnhuber Aquatic Research Lab (SARL) in Corvallis. We then moved to the Oregon Coast for more scientific sessions, hiking, and int…
ToxPi software updated (v2.2) @ www.toxpi.org
The complete .zip is available for free download at: www.toxpi.org
This update adds flexibility for setting weights, offers improved "zoom" capabilities, updates information included in the saved Results Table object, and fixes issues identified by users.
The updated manual includes a full …
Updated ToxPi version (v 2.1) available at www.toxpi.org
A major update to the ToxPi interface (version 2.1) is now available at:
This update includes major speed improvements (especially noticeable when clustering large datasets), the ability to zoom/pan on cluster dendrograms, as well as other refinements for GUI users.
Updated ToxPi version (20180329) available at www.toxpi.org
http://toxpi.org/
ToxPi Graphical User Interface 2.0: Dynamic exploration, visualization, and sharing of integrated data models (2018) BMC Bioinformatics
Marvel SW, To K, Grimm FA, Wright FA, Rusyn I, Reif DM. ToxPi Graphical User Interface 2.0: Dynamic exploration, visualization, and sharing of integrated data models. BMC Bioinformatics. 2018 Mar 5;19(1):80. doi: 10.1186/s12859-018-2089-2. PubMed PMID: 29506467.
Flash Report: SEAZIT Ontologies Workshop
A report on the SEAZIT (Systematic Evaluation of the Application of Zebrafish in Toxicology) Ontologies Workshop has been published:
https://ntp.niehs.nih.gov/iccvam/methods/dev-repro/ontologies-wksp-rept-2017.pdf
Transgenerational inheritance of neurobehavioral and physiological deficits from developmental exposure to benzo [a] pyrene in zebrafish (2017) Toxicology and Applied Pharmacology
Knecht AL, Truong L, Marvel SW, Reif DM, Garcia A, Lu C, Simonich MT, Teeguarden JG, Tanguay RL. Transgenerational inheritance of neurobehavioral and physiological deficits from developmental exposure to benzo[a]pyrene in zebrafish. Toxicol Appl Pharmacol. 2017 Jun 3;329:148-157. doi: 10.1016/…
Aggregate entropy scoring for quantifying activity across endpoints with irregular correlation structure (2016) Reproductive Toxicology
Zhang G, Marvel S, Truong L, Tanguay RL, Reif DM. Aggregate entropy scoring
for quantifying activity across endpoints with irregular correlation structure.
Reprod Toxicol. 2016 Apr 27;62:92-99. doi: 10.1016/j.reprotox.2016.04.012. [Epub
ahead of print] PubMed PMID: 27132190.
Selected as cov…
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