Jonathon F Fleming, John S House, Jessie R Chappel, Alison A Motsinger-Reif, David M Reif. Guided optimization of ToxPi model weights using a Semi-Automated approach. Computational Toxicology. 2024/3/1.
Blog posts : "jonathon fleming"
Aggregated Molecular Phenotype Scores: Enhancing Assessment and Visualization of Mass Spectrometry Imaging Data for Tissue-Based Diagnostics (2023) Anal Chem
Chappel JR, King ME, Fleming J, Eberlin LS, Reif DM, Baker ES. Aggregated Molecular Phenotype Scores: Enhancing Assessment and Visualization of Mass Spectrometry Imaging Data for Tissue-Based Diagnostics. Anal Chem. 2023 Aug 29;95(34):12913-12922. doi: 10.1021/acs.analchem.3c02389. Epub 2023 Aug 14.…
ToxPi*GIS Toolkit: creating, viewing, and sharing integrative visualizations for geospatial data using ArcGIS (2022) J Expo Sci Environ Epidemiol.
Fleming J, Marvel SW, Supak S, Motsinger-Reif AA, Reif DM. ToxPi*GIS Toolkit: creating, viewing, and sharing integrative visualizations for geospatial data using ArcGIS. J Expo Sci Environ Epidemiol. 2022 Apr 26. doi: 10.1038/s41370-022-00433-w. Epub ahead of print. PMID: 35474345.
Jonathon passes PhD Qual Exam!
Jonathon passed his Bioinformatics Qualifying Exam and is now a candidate for the PhD in Bioinformatics!
Convergent evolution of polyploid genomes from across the eukaryotic tree of life (2022) G3
Hao Y, Fleming J, Petterson J, Lyons E, Edger PP, Pires JC, Thorne JL, Conant GC. Convergent evolution of polyploid genomes from across the eukaryotic tree of life. G3 (Bethesda). 2022 Apr 22:jkac094. doi: 10.1093/g3journal/jkac094. Epub ahead of print. PMID: 35451464.
Kirkwood et al. pub recognized as "NIEHS Paper of the Month"
https://factor.niehs.nih.gov/2022/4/papers/dert/index.htm
Pine needles work as passive samplers for PFAS
NIEHS-funded researchers showed that pine needles can be used as a tool to monitor the presence and distribution of per- and polyfluoroalkyl substances (PFAS) over time. The pine needle’s w…
Utilizing Pine Needles to Temporally and Spatially Profile Per- and Polyfluoroalkyl Substances (2022) Environ Sci Technol.
Kirkwood KI, Fleming J, Nguyen H, Reif DM, Baker ES, Belcher SM. Utilizing Pine Needles to Temporally and Spatially Profile Per- and Polyfluoroalkyl Substances (PFAS). Environ Sci Technol. 2022 Feb 17. doi: 10.1021/acs.est.1c06483. Epub ahead of print. PMID: 35175744.
https://pubmed.ncbi.nlm.nih.…
Collaborative paper featuring Jonathon's work highlighted in the news
https://news.ncsu.edu/2022/02/pine-needles-story-of-nc-pfas/
Pine Needles Tell the Story of PFAS in North Carolina
10 blog posts